Alberto J Martin

Biography

Research Interests:

• machine learning
• protein folding
• protein stability
• Protein structure and function prediction

General

Name and Title: 

Alberto J Martin

Position: 

Postgraduate Student

Supervisor: 

Gianluca Pollastri

Research Group: 

AmMBio

Research Project: 

Protein folding pathways prediction to improve protein structure prediction

Phone: 

+353 1 716 5337

Email: 

Personal Website: 

http://gruyere.ucd.ie/~alberto/

• Publications

Publications

- I. Walsh, D. Bau, A.J.M. Martin, C. Mooney, A. Vullo, G. Pollastri. "Ab initio and template-based prediction of multi-class distance maps by twodimensional recursive neural networks" BMC Structural Biology, 9:5, 2009.

- I. Walsh, A.J.M. Martin, C. Mooney, E. Rubagotti, A. Vullo and G. Pollastri "Ab initio and homology based prediction of protein domains by recursive neural networks" BMC Bioinformatics, 2009 (submitted). - A.J.M. Martin, A. Vullo, G. Pollastri. "Neural Network Pairwise Interaction Fields for protein model quality assessment". Proceedings of the Learning and Intelligent OptimizatioN Conference - LION 3. January 14- 18, 2009 - Trento, Italy. The proceedings will be published in Lecture Notes in Computer Science (accepted).

- A.J.M. Martin, D. Bau, I. Walsh, A. Vullo, G. Pollastri. "Long-range information and physicality constraints improve predicted protein contact maps" Journal of Bioinformatics and Computational Biology, 6(5):1001- 20, 2008.

- G. Pollastri, A.J.M. Martin, C. Mooney, A. Vullo. "Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information" BMC Bioinformatics, 8:201, 2007.

- D. Bau, A.J.M. Martin, C. Mooney, A. Vullo, I. Walsh, G. Pollastri. "Distill: A suite of web servers for the prediction of one-, two- and threedimensional structural features of proteins" BMC Bioinformatics, 7:402, 2006.